PBDB Data Service：Fossil occurrences（化石产出记录）

描述

本节中描述的 URL 路径提供了对古生物学数据库中表示的化石出现的信息的访问。这些事件可以通过各种标准来选择，包括：名称，位置，年龄，输入者和分类学识别。点击此链接，了解有关在此数据服务中使用分类名称的详细信息。

摘要

以下 URL 路径可用：

1. Single fossil occurrence（单条化石产出记录）

此操作返回有关单个匹配项的信息，由其标识符选择。根据您选择的输出块，响应将包含一些描述发生的字段和一些描述它所属集合的字段。

• /data1.2/occs/single.json?id=1001&show=loc

{
"elapsed_time":0.00137,
"records": [
{"oid":"occ:1001","cid":"col:160","idn":"Wellerella sp.","tna":"Wellerella","rnk":5,"tid":"txn:29018","oei":"Missourian","eag":305.9,"lag":303.4,"rid":"ref:12","cc2":"US","stp":"Missouri","cny":"Clinton","prc":"__","ggc":"W side of I35 6.4 km S of Lathrop exit and S of Co.Rd.V overpass sw1/4 nw1/4 sec.17 t54n r30w"}
]
}

• /data1.2/occs/single.txt?id=1001&show=loc,crmod

"occurrence_no","record_type","reid_no","flags","collection_no","identified_name","identified_rank","identified_no","difference","accepted_name","accepted_rank","accepted_no","early_interval","late_interval","max_ma","min_ma","reference_no","cc","state","county","latlng_basis","latlng_precision","geogscale","geogcomments","created","modified"
"1001","occ","","","160","Wellerella sp.","genus","29018","","Wellerella","genus","29018","Missourian","","305.9","303.4","12","US","Missouri","Clinton","based on nearby landmark","seconds","","W side of I35 6.4 km S of Lathrop exit and S of Co.Rd.V overpass sw1/4 nw1/4 sec.17 t54n r30w","1998-11-20 07:59:51","1998-11-20 09:59:51"

2. List of fossil occurrences（化石产出记录列表）

此操作返回有关根据您提供的参数选择的多个匹配项的信息。您可以按分类、地理位置、年龄、环境和许多其他条件选择产出记录。如果选择 csv 或 tsv 输出格式，则获得的输出将与经典下载非常相似。

• /data1.2/occs/list.txt?base_name=Cetacea&interval=Miocene&show=loc,class

"occurrence_no","record_type","reid_no","flags","collection_no","identified_name","identified_rank","identified_no","difference","accepted_name","accepted_rank","accepted_no","early_interval","late_interval","max_ma","min_ma","reference_no","cc","state","county","latlng_basis","latlng_precision","geogscale","geogcomments","phylum","class","order","family","genus"
"147937","occ","","","13063","n. gen. Pinocetus n. sp. polonicus","species","53140","","Pinocetus polonicus","species","53140","Langhian","","15.97","13.82","4344","PL","","","estimated from map","seconds","outcrop","","Chordata","Mammalia","Cetacea","NO_FAMILY_SPECIFIED","Pinocetus"
"148079","occ","","","13078","n. gen. Sachalinocetus n. sp. cholmicus","species","63225","","Sachalinocetus cholmicus","species","63225","Early Miocene","Middle Miocene","23.03","11.608","4357","RU","","","based on political unit","2","local area","","Chordata","Mammalia","Cetacea","NO_FAMILY_SPECIFIED","Sachalinocetus"
"148335","occ","","","13090","n. gen. Praekogia n. sp. cedrosensis","species","53139","","Praekogia cedrosensis","species","53139","Messinian","","7.246","5.333","4361","MX","Baja California","","","minutes","outcrop","on the ridge west of ""Arroyo Delphin"" the first prominent drainage system to reach the shoreline north of the point where Valle Blanca reaches the shoreline, south of the cannery village, Isla Cedros, Baja California, Mexico\r\n","Chordata","Mammalia","Cetacea","Kogiidae","Praekogia"

• /data1.2/occs/list.json?base_name=Cetacea&interval=Miocene&show=loc,class

{
"elapsed_time":0.0054,
"records": [
{"oid":"occ:147937","cid":"col:13063","idn":"n. gen. Pinocetus n. sp. polonicus","tna":"Pinocetus polonicus","rnk":3,"tid":"txn:53140","oei":"Langhian","eag":15.97,"lag":13.82,"rid":"ref:4344","cc2":"PL","prc":"__","gsc":"outcrop","phl":"Chordata","cll":"Mammalia","odl":"Cetacea","fml":"NO_FAMILY_SPECIFIED","gnl":"Pinocetus"},
{"oid":"occ:148079","cid":"col:13078","idn":"n. gen. Sachalinocetus n. sp. cholmicus","tna":"Sachalinocetus cholmicus","rnk":3,"tid":"txn:63225","oei":"Early Miocene","oli":"Middle Miocene","eag":23.03,"lag":11.608,"rid":"ref:4357","cc2":"RU","prc":"__","gsc":"local area","phl":"Chordata","cll":"Mammalia","odl":"Cetacea","fml":"NO_FAMILY_SPECIFIED","gnl":"Sachalinocetus"},

3. Geographic summary of fossil occurrences（化石记录的地理摘要）

此操作通过将选定的事件集映射到地理聚类来汇总这些事件集。其目的是提供显示化石出现的地理分布的地图的生成。您可以指定可用于上述 occs/list 操作的任何参数。提供多个级别的地理分辨率。

• /data1.2/occs/geosum.json?base_name=cetacea&level=2

{
"elapsed_time":0.0887,
"records": [
{"oid":"clu:2000023","nco":1,"noc":12,"lng":-179.983337,"lat":-43.500000},
{"oid":"clu:2000080","nco":1,"noc":1,"lng":-179.628616,"lat":71.268059},
{"oid":"clu:2001025","nco":1,"noc":1,"lng":-177.500000,"lat":-39.333332},
{"oid":"clu:2001059","nco":1,"noc":1,"lng":-177.372334,"lat":28.231366},

• /data1.2/config.json?show=clusters

{
"elapsed_time":7.5e-05,
"records": [
{"cfg":"clu","lvl":"1","deg":"6.00000","cnt":"821","mco":"5670","moc":"43550"},
{"cfg":"clu","lvl":"2","deg":"2.00000","cnt":"3808","mco":"2205","moc":"16165"},
{"cfg":"clu","lvl":"3","deg":"0.50000","cnt":"17919","mco":"932","moc":"12081"}
]
}

4. Taxonomy of fossil occurrences（化石记录的分类）

此操作返回一组选定化石实例的分类层次结构。您可以使用对 occs/list 操作有效的任何参数选择要分析的事件集。您可以使用具有相同参数的两种操作发出请求，这将为您提供实例列表和按分类单元列出的摘要表。如果包括subcounts，则每个分类单元记录将包括该分类单元中包含的选定一组出现的物种、属等的数量。

• /data1.2/occs/taxa.txt?base_name=Cetacea&interval=Miocene&show=attr

"orig_no","taxon_no","record_type","flags","taxon_rank","taxon_name","taxon_attr","difference","accepted_no","accepted_rank","accepted_name","parent_no","container_no","reference_no","is_extant","n_occs"
"36652","81220","txn","B","unranked clade","Cetacea","(Brisson 1762)","","36652","unranked clade","Cetacea","87634","","16880","extant","3199"
"134057","134057","txn","","unranked clade","Pelagiceti","Uhen 2008","","134057","unranked clade","Pelagiceti","36652","","28136","extant","3046"
"63145","63145","txn","","unranked clade","Neoceti","Fordyce and de Muizon 2001","","63145","unranked clade","Neoceti","134057","","10151","extant","3046"
"42971","42971","txn","","suborder","Mysticeti","(Cope 1891)","","42971","suborder","Mysticeti","63145","","18085","extant","825"

• /data1.2/occs/taxa.txt?strat=green river fm&rank=genus-order&show=attr

"orig_no","taxon_no","record_type","flags","taxon_rank","taxon_name","taxon_attr","difference","accepted_no","accepted_rank","accepted_name","parent_no","container_no","reference_no","is_extant","n_occs"
"54919","54919","txn","","order","Ericales","Berchtold and Presl 1820","","54919","order","Ericales","55354","","76044","extant","2"
"55618","55618","txn","","family","Styracaceae","de Candolle and Sprengel 1821","","55618","family","Styracaceae","54919","","8820","extant","1"
"418963","418963","txn","","genus","Styrax","Linnaeus 1753","","418963","genus","Styrax","55618","","8628","extant","1"

5. Fossil diversity over time (full computation) 化石多样性随时间的变化（完整计算）

此操作根据一组选定的产出记录返回化石多样性随时间变化的表格。您可以使用对 occs/list 操作有效的任何参数选择要分析的事件集。此操作可能会占用大量服务器时间，因此，如果您只想显示快速概览图，请使用 occs/quickdiv 操作。

• /data1.2/occs/diversity.txt?base_name=Dinosauria^Aves&continent=NOA&count=genera

"interval_no","interval_name","max_ma","min_ma","X_Ft","X_bL","X_FL","X_bt","sampled_in_bin","implied_in_bin","n_occs"
"106","Priabonian","38.00000","33.90000","0","0","0","0","0","0","1"
"107","Bartonian","41.30000","38.00000","0","0","0","0","0","0","0"
"108","Lutetian","47.80000","41.30000","0","0","0","0","0","0","0"
"109","Ypresian","56.00000","47.80000","0","0","0","0","0","0","0"

6. Fossil diversity over time (quick computation) 化石多样性随时间的变化（快速计算）

此操作返回化石多样性随时间变化的表格，类似于 occs/diversity 提供的表格。它返回结果的速度要快得多，但只返回每个时间间隔中出现的不同分类群的基本计数。此操作适用于快速概览图;如果您想进行详细的多样性分析，我们建议您改用occs/diversity操作，或者list of occurrences并执行您自己的程序，以制表随时间推移的分类群多样性。

• /data1.2/occs/quickdiv.txt?base_name=Dinosauria^Aves&continent=NOA&count=genera

"interval_no","interval_name","max_ma","min_ma","sampled_in_bin","n_occs"
"111","Danian","66.00000","61.60000","1","1"
"112","Maastrichtian","72.10000","66.00000","137","3533"
"113","Campanian","83.60000","72.10000","130","2558"
"114","Santonian","86.30000","83.60000","8","33"

7. Fossil diversity over time (diagnostic) 化石多样性随时间的变化（诊断）

此操作提供了一种检查 occs/diversity 操作计数的分类群的方法。可以将与传递给后者相同的参数传递给此操作，但添加 diag 或list参数。前者将向您展示如何解释相关事件，而后者将向您展示计算了哪些分类名称。

• /data1.2/occs/checkdiv.txt?base_name=Dinosauria^Aves&continent=NOA&count=genera&list=Santonian

"interval_no","interval_name","diagnosis","orig_no","counted_name","accepted_name","occ_ids"
"114","Santonian","counted","267728","Acrotholus","Acrotholus audeti","1135009"
"114","Santonian","counted","346306","Eotrachodon","Eotrachodon orientalis","1340987"
"114","Santonian","counted","228691","Gryphoceratops","Gryphoceratops morrisoni","1024996"

8. Most prevalent taxa（最普遍的分类群）

此操作从选定的化石出现集中返回最普遍的分类群列表（根据产出记录）。这些分类群将是门和/或纲，具体取决于列表的大小和请求的条目数。大致处于纲水平的主要分类群可以包括在内，即使它们没有正式排名在该级别。与此数据服务的大多数操作不同，参数limit在确定结果的元素时非常重要。较大的限制将倾向于显示纲而不是门。

• /data1.2/occs/prevalence.json?continent=noa&interval=mesozoic&limit=10

{
"elapsed_time":0.35,
"records": [
{"oid":"7805","nam":"Mollusca","rnk":20,"img":"935","noc":52761},
{"oid":"4","nam":"Radiolaria","rnk":17,"img":"1723","noc":11669},
{"oid":"36322","nam":"Reptilia (other)","rnk":17,"img":"243","noc":5864},
{"oid":"38505","nam":"Saurischia","rnk":17,"img":"1019","noc":3182},
{"oid":"38712","nam":"Ornithischia","rnk":17,"img":"1014","noc":2973},

9. Stratigraphy of fossil occurrences（化石产出地层学）

此操作返回有关发现化石的地质地层的信息。您可以将相同的过滤参数传递给 occs/list 和 occs/strata，这将为您提供事件列表和按层划分的摘要。

• /data1.2/occs/strata.json?base_name=Cetacea&interval=Miocene&textresult

{
"elapsed_time":0.09,
"records": [
{"lth":"\"carbonate\",\"limestone\",\"mixed carbonate-siliciclastic\",\"shale\",claystone,conglomerate,grainstone,lime mudstone,marl,marl/sandstone,mudstone,phosphorite,radiolarite,sandstone,sandstone/claystone,sandstone/gravel,siltstone,tuff/\"siliciclastic\"","eag":7.246,"lag":0,"cc2":"AM,AO,AR,AT,AU,AZ,BA,BE,CH,CL,CZ,DE,DK,EG,ES,FR,GE,HR,HU,IR,IT,JP,KZ,MD,MG,MT,MX,NL,NZ,PE,PK,PL,PT,RO,RS,RU,SI,SK,TF,TR,TW,UA,UK,US,ZA","nco":362,"noc":737},
{"smb":"Aalten","lth":"\"siliciclastic\"","eag":15.97,"lag":13.82,"cc2":"NL","nco":1,"noc":2},
{"smb":"Eibergen","lth":"claystone","eag":13.82,"lag":11.62,"cc2":"NL","nco":2,"noc":43},
{"smb":"Sandberg","lth":"sandstone","eag":13.65,"lag":11.1,"cc2":"SK","nco":2,"noc":3},
{"smb":"Zenderen","lth":"sandstone","eag":11.608,"lag":5.333,"cc2":"NL","nco":1,"noc":15},
{"sfm":"Akaishi","eag":7.246,"lag":5.333,"cc2":"JP","nco":1,"noc":2},

10. Bibliographic references for fossil occurrences（化石产出参考书目）

此操作返回有关与化石出现关联的书目参考的信息。您可以将相同的过滤参数传递给 occs/list 和 occs/refs，这将为您提供匹配项列表和关联引用的列表。

• /data1.2/occs/refs.ris?base_name=Cetacea&interval=Miocene&textresult

Provider: The Paleobiology Database
Database: The Paleobiology Database
Content: text/plain; charset="utf-8"TY  - JOUR
ID  - ref:12188
AU  - Abel,O.
PY  - 1905///
TI  - Les Odontocètes du Boldérien (Miocène Supérieur) D'Anvers
T2  - Mémoires du Musée royal D'Histoire Naturelle de Belgique
VL  - 3
SP  - 1-155
LA  - German
KW  - occ
ER  - 

11. Occurrences grouped by bibliographic reference（按书目参考分组的产出记录）

此操作返回有关多个匹配项的信息，这些信息是根据匹配项的属性和输入它们的书目参考文献的属性的某种组合选择的。可以将此操作与 occs/refs 结合使用，以显示每个选定参照的所有匹配项，或所有符合特定条件的匹配项。

• /data1.2/occs/byref.txt?base_name=Cetacea&interval=Miocene&textresult

"occurrence_no","record_type","reid_no","flags","collection_no","identified_name","identified_rank","identified_no","difference","accepted_name","accepted_rank","accepted_no","early_interval","late_interval","max_ma","min_ma","reference_no"
"487305","occ","","","18506","Squalodon n. sp. crassus","species","65161","nomen dubium","Odontoceti","suborder","42937","Miocene","","23.03","5.333","946"
"289579","occ","","","18549","Squalodon ? sp.","genus","36852","","Squalodon","genus","36852","Early Barstovian","","15.97","13.6","1145"
"866772","occ","","","19595","""Squalodon"" errabundus","species","63839","recombined as","Zarhinocetus errabundus","species","63839","Langhian","","15.97","13.82","1946"
"762600","occ","","","81498","Pomatodelphis inaequalis","species","62907","","Pomatodelphis inaequalis","species","62907","Hemphillian","","10.3","4.9","1998"

12. Taxa associated with fossil occurrences grouped by bibliographic reference（与化石事件相关的分类群，按书目参考分组）

此操作返回有关与化石出现相关的分类学名称的信息，这些信息根据提及它们的书目参考进行分组。可以将此操作与 /data1.2/occs/refs_doc.html 结合使用，以显示每个引用从中输入的与所选集中至少一个匹配项关联的所有分类单元。

• /data1.2/occs/taxabyref.txt?base_name=Cetacea&interval=Miocene&textresult

"orig_no","taxon_no","record_type","reference_no","ref_type","flags","taxon_rank","taxon_name","difference","accepted_no","accepted_rank","accepted_name","parent_no","is_extant","n_occs"
"36652","81220","txn","16880","auth","","unranked clade","Cetacea","","36652","unranked clade","Cetacea","87634","extant","5039"
"36652","81220","txn","73428","class","","unranked clade","Cetacea","","36652","unranked clade","Cetacea","87634","extant","5039"
"69846","69846","txn","16766","auth","","genus","Archaeocetus","","69846","genus","Archaeocetus","36652","extinct","3"
"69846","69846","txn","72624","class","","genus","Archaeocetus","","69846","genus","Archaeocetus","36652","extinct","3"

13. Opinions for fossil occurrences（化石产出观点）

此操作返回有关与化石发生相关的分类意见的信息。您可以使用它来检索与任何选定的一组事件相关的意见。

• /data1.2/occs/opinions.txt?base_name=Cetacea&interval=Miocene&textresult

"opinion_no","record_type","opinion_type","taxon_rank","taxon_name","orig_no","child_name","child_spelling_no","status","parent_name","parent_no","parent_spelling_no","spelling_reason","author","pubyr","reference_no"
"800409","opn","class","unranked clade","Cetacea","36652","","81220","belongs to","Cetartiodactyla","71830","","rank change","Bisconti and Bosselaers","2020","73428"
"656343","opn","unsel","unranked clade","Cetacea","36652","","81220","belongs to","Cetartiodactyla","71830","","rank change","Berta","2017","63144"
"640342","opn","unsel","class","Cetacea","36652","","351937","belongs to","Artiodactyla","87634","","rank change","Godfrey et al.","2017","62154"
"586507","opn","unsel","order","Cetacea","36652","","36652","belongs to","Mammalia","36651","","original spelling","Boessenecker and Fordyce","2015","56335"